Basic Information
VIS ID
TVIS10002227
Fusion event
HBV-chr1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
210062365/209889020 (Hg38)
End
210062365/209889020 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/265510; hsa-mir-1182/Downstream/2188593;
Nearest TSS
ENST00000473358/Upstream/50215; ENST00000629778/Downstream/49154;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/60937, chr1-CpG: 114/Downstream/48814
Nearby gene
UTP25(-31455) ; SYT14(+49154) ;
Upstream sequence
tgcctgccagtcccgcgccttgtttccgcacccctcagcccttgggcggtggatgggacgaaagggcgccgcggagcagggggcggcgctcgtcggggag
Downstream sequence
gctgtacaggagtccacggcgggttgggggaggctcaggcatggcgggctgcaggtcccgagccctgccccgcggggaggcagctaaggcccggcgaaat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate