VISDB Viral Integration Site DataBase

VIS ID

TVIS10002235

Fusion event

HBV-ABI2 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr2

Cytoband

q33.2

Reference genome

Start

End

204210287/203345564 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-331-3p ; hsa-mir-375 ; hsa-mir-1224-5p ; hsa-mir-30c-5p ; hsa-mir-17-5p ; hsa-mir-155-5p ; hsa-mir-136-5p ; hsa-mir-192-3p ; hsa-mir-6786-3p ; hsa-mir-365b-3p ; hsa-mir-365a-3p ; hsa-mir-599 ; hsa-mir-5582-3p ; hsa-mir-3161 ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-3127-5p ; hsa-mir-6740-3p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-211-3p ; hsa-mir-9500 ; hsa-mir-3187-3p ; hsa-mir-4529-5p ; hsa-mir-3190-5p ; hsa-mir-892b ; hsa-mir-193a-3p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-8084 ; hsa-mir-5583-5p ; hsa-mir-3129-3p ; hsa-mir-620 ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-297 ; hsa-mir-3924 ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-511-3p ; hsa-mir-3976 ; hsa-mir-5580-3p ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-3177-5p ; hsa-mir-4267 ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-mir-4302 ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-2681-5p ; hsa-mir-432-3p ; hsa-mir-6826-3p ; hsa-mir-1193 ; hsa-mir-8069 ; hsa-mir-4308 ; hsa-mir-6801-3p ; hsa-mir-6810-3p ; hsa-mir-888-5p ; hsa-mir-6751-3p ; hsa-mir-6809-3p ; hsa-mir-4753-3p ; hsa-mir-130b-5p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-6849-3p ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-1236-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-4778-3p ; hsa-mir-1178-3p ; hsa-mir-502-5p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-3934-3p ; hsa-mir-532-3p ; hsa-mir-1915-5p ; hsa-mir-6841-3p ; hsa-mir-1224-3p ; hsa-mir-3937 ; hsa-mir-7853-5p ; hsa-mir-105-5p ; hsa-mir-3658 ; hsa-mir-3653-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6748-5p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-3165 ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-381-5p ; hsa-mir-6134 ; hsa-mir-6089 ; hsa-mir-383-3p ; hsa-mir-5089-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-4438 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-3152-5p ; hsa-mir-4774-3p ; hsa-mir-24-2-5p ; hsa-mir-24-1-5p ; hsa-mir-338-5p ; hsa-mir-6796-3p ; hsa-mir-99b-3p ; hsa-mir-99a-3p ; hsa-mir-4769-5p ; hsa-mir-4654 ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-4648 ; hsa-mir-8059 ; hsa-mir-4471 ; hsa-mir-1292-5p ; hsa-mir-134-3p ; hsa-mir-1-3p ; hsa-mir-206 ; hsa-mir-361-5p ; hsa-mir-3652 ; hsa-mir-374a-3p ; hsa-mir-4430 ; hsa-mir-4694-5p ; hsa-mir-6128 ; hsa-mir-613 ; hsa-mir-6499-3p ; hsa-mir-6879-3p

Nearest miRNA

hsa-mir-10b/Upstream/14212453; hsa-mir-1244-1/Downstream/3437670;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/16903, chr2-CpG: 65/Downstream/189203

Nearest cancer related gene

ABI2(TSG, No orient, 0)

Upstream sequence

tccggacacaatcttagctcactgcaatctccacctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggacaacaggtgcccgccac

Downstream sequence

catgccagctaatttggtatttttagtagagatggggtttcaccgtcttggccagtctggtctcgaactcctgacttcaggtgatccacccacctcggcc