Basic Information
VIS ID
TVIS10002250
Fusion event
HBV-chr9 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
10142/10142 (Hg38)
End
10142/10142 (Hg38)
Location type
Promoter;downstream
Target gene
DDX11L5 ; WASHC1
Nearest miRNA
hsa-let-7a-1/Downstream/20002;
Nearest TSS
ENST00000422679/Downstream/17515;
Nearest CpG islands
None/Target, None/Upstream, chr9-CpG: 64/Downstream/18707
Upstream sequence
tctATGATGTTTAACGTATATGCAATTTAGGTGCTTTCAAAATAGACAATATCTAAATTTTAAGTAATAAAAGATATTTAATGACTCACAAAGAAGAATA
Downstream sequence
ccctaaccctaccctaacccctaacccctaacccctaacccctaacccttaaccctaaccctaaccctaccctaaccctaaccctaacccctaaccccta
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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