Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002257
Fusion event
HBV-WASH5P integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
Start
End
61141/61141 (Hg38)
Location type
ncRNA_exonic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-let-7e/Downstream/10832;
Nearest TSS
Nearest CpG islands
None/Target, None/Upstream, chr19-CpG: 112/Downstream/9202
Upstream sequence
GGTGGAGGGGCTGCAGACTCTGGGCTAGGGAAAGCTGGGATGTCTCTAAAGGTTGGAATGAATGGCCTAGAATCCGACCCAATAAGCCAAAGCCACTTCC
Downstream sequence
ACCAACGTTAGAAGGCCTTGGCCCCCAGAGAGCCAATTTCACAATCCAGAAGTCCCCGTGCCCTAAAGGGTCTGCCCTGATTACTCCTGGCTCCTTGTGT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.