Basic Information
VIS ID
TVIS10002259
Fusion event
HBV-chr19 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
71166/71166 (Hg38)
End
71166/71166 (Hg38)
Location type
Promoter;downstream
Fragile sites / regions
FRA19B
Target gene
FAM138A ; FAM138F ; WASH5P
Nearest miRNA
hsa-let-7e/Downstream/807;
Nearest TSS
ENST00000633603/Downstream/612;
Nearest CpG islands
chr19-CpG: 112/Target, None/Upstream, None/Downstream
Upstream sequence
CGCGGCTCCAGGACCCCGTCGACCCGGAGCGCTGTCCTGTCGGGCCGAGTCGCGGGCCTGGGCACGGAACTCACGCTCACTCCGAGCTCCCGACGTGCAC
Downstream sequence
ACGGCTCCCATGCGTTGTCTTCCGAGCGTCAGGCCGCCCCTACCCGTGCTTTCTGCTCTGCAGACCCTCTTCCTAGACCTCCGTCCTTTGTCCCATCGCT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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