GSG1L _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002284
Fusion event
HBV-GSG1L integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
28020247/28008926 (Hg38)
End
28020247/28008926 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA16E
Target gene
GSG1L
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1225/Upstream/1983616; hsa-mir-11401/Downstream/382056;
Nearest TSS
ENST00000527434/Upstream/120769; ENST00000635780/Downstream/54262;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/458687, chr16-CpG: 182/Downstream/53570
Upstream sequence
gagacagagtctcgatttgtcacccaggctggagtacagtggcgggatttcggaccactgcaacctctgcctcccaggttaaagcaattctcctgcctca
Downstream sequence
gcctccagagtagctgggattacagttacccgccaccacgcctggctaatttttgtatttttagtagagacagggtttcgtcatgttggccagtctggtc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate