Basic Information
VIS ID
TVIS10002291
Fusion event
HBV-LOC105370777 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr15
Cytoband
q14
Reference genome
GRCh37/hg19
Start
39159805/38867604 (Hg38)
End
39159805/38867604 (Hg38)
Location type
Intronic
Target gene
LOC105370777
Nearest miRNA
hsa-mir-1233-1/Upstream/1894703; hsa-mir-10393/Downstream/2823981;
Nearest TSS
ENST00000557528/Upstream/14172; ENST00000560709/Downstream/151629;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/302147, chr15-CpG: 109/Downstream/712722
Nearby gene
LINC02694(-167566) ; C15orf54(+383080) ;
Upstream sequence
AAATGCACCATTTTAGCTACCTGAACTTAGCTGACTTCAGTTTGTTATTAGGAAGGCTTTTAGGGGCTCACACGGCAACAGAGAGCTCGTCTGTGTTTGC
Downstream sequence
TCGGGTGAGAGAGAAACATCCACTCTGAAGACCCAGTCCAAGTTTATCCATTGTAAGGAATAACAGGAAGTCTTACTCTTACTGAGCATTTGCAAACCCA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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