Basic Information
VIS ID
TVIS10002299
Fusion event
HBV-LOC107987272 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr19
Cytoband
q13.43
Reference genome
GRCh37/hg19
Start
59098046/58586679 (Hg38)
End
59098046/58586679 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
LOC107987272
Nearest miRNA
hsa-let-7e/Upstream/36303;
Nearest TSS
ENST00000633603/Upstream/13104; ENST00000596029/Downstream/12598;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/4773, None/Downstream
Nearby gene
CENPBD1P1(-2284) ;
Upstream sequence
cagggtcagggtcagggtcagggtcagggttagggtttagggtcagggtcagggtcagggtcagggttagggtagggttagggttagggttagggttagg
Downstream sequence
gtagggttagggttagggttagggttagggtATTGTAAATAATTTCACATTACTAATAATAAATTATTATTTGTATTACACTATTACGTAATGTAAAGGC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate