Basic Information
VIS ID
TVIS10002300
Fusion event
HBV-LINC00266-1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62918272/64286919 (Hg38)
End
62918272/64286919 (Hg38)
Location type
Promoter
Target gene
LINC00266-1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1-1/Upstream/209909;
Nearest TSS
ENST00000382410/Upstream/15437; ENST00000279067/Downstream/3466;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/16358, chr20-CpG: 92/Downstream/29376
Upstream sequence
gttagggtagggtcagggtcagggtcagggtcagggtcagggttaagggtcagggtcagggtcagggtcagggtcaggggttagggttagggttagggtc
Downstream sequence
agggtcaggggttagggtcggggtcggggtcggggtcaggggtcaggggtcaagggtcggggtcaggggtcggggtcagggtgagggtgagggtgagggt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate