VISDB Viral Integration Site DataBase

VIS ID

TVIS10002307

Fusion event

HBV-TENM4 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr11

Cytoband

q14.1

Reference genome

Start

End

78996184/79285139 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-193b-3p ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-100-3p ; hsa-mir-3121-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-642a-5p ; hsa-mir-4290 ; hsa-mir-1236-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-6736-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-6826-3p ; hsa-mir-3925-3p ; hsa-mir-3667-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-622 ; hsa-mir-532-5p

Nearest miRNA

hsa-mir-10392/Upstream/3949953; hsa-let-7a-2/Downstream/116883;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/215136, chr11-CpG: 292/Downstream/152175

Upstream sequence

ccatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggtgggcatctgtagtcccagctacttgggaggatg

Downstream sequence

aggcaggagaattgctttaacctgggaggcagaggttgcagtgagccaagatcttgtcactgcactctagcctggcaacagagaaagactcagtttcaaa

Target sequence

ACTTAATATTTACCTTTTTAAAATATGTGGCTGAAATGTTAAAGTGAACTCCTGTACTCTCCCCTTTATACAATGAGAATTTCATTCCTGAGTTAGTGGGGTCTGGAAGGTAGGGTTGGAAGACATGTATGTCAGAAAATAAATTTTCTTGACCTCTCACTAAATGATTGTTTTAGCATTACTTAGATTACTTTCACTCACTTAGTTTTATGTGGTCAAAAAATAAGGGGGGAAAAGCCCTTGAAATACACTTAG