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TVIS10002309
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002309
Fusion event
HBV-RPS6KA5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr14
Cytoband
q32.11
Reference genome
GRCh37/hg19
Start
91499559/91033215 (Hg38)
End
91499559/91033215 (Hg38)
Location type
Intronic
Target gene
RPS6KA5
miRNAs that regulate target gene
hsa-mir-148a-3p
;
hsa-mir-128-3p
;
hsa-mir-101-3p
;
hsa-mir-27a-3p
;
hsa-mir-744-5p
;
hsa-mir-93-5p
;
hsa-mir-19a-3p
;
hsa-mir-4437
;
hsa-mir-24-3p
;
hsa-mir-4635
;
hsa-mir-5088-5p
;
hsa-mir-548n
;
hsa-mir-1-5p
;
hsa-mir-340-5p
;
hsa-mir-142-5p
;
hsa-mir-5590-3p
;
hsa-mir-526b-3p
;
hsa-mir-106a-5p
;
hsa-mir-106b-5p
;
hsa-mir-17-5p
;
hsa-mir-20a-5p
;
hsa-mir-519d-3p
;
hsa-mir-20b-5p
;
hsa-mir-195-3p
;
hsa-mir-16-2-3p
;
hsa-mir-664a-3p
;
hsa-mir-6504-3p
;
hsa-mir-5586-3p
;
hsa-mir-376c-3p
;
hsa-mir-301b-3p
;
hsa-mir-454-3p
;
hsa-mir-301a-3p
;
hsa-mir-3666
;
hsa-mir-130a-3p
;
hsa-mir-130b-3p
;
hsa-mir-4295
;
hsa-mir-106a-3p
;
hsa-mir-6834-5p
;
hsa-mir-8077
;
hsa-mir-4663
;
hsa-mir-7160-5p
;
hsa-mir-6133
;
hsa-mir-6130
;
hsa-mir-6129
;
hsa-mir-6127
;
hsa-mir-4510
;
hsa-mir-4419a
;
hsa-mir-6875-5p
;
hsa-mir-3126-5p
;
hsa-mir-4728-3p
;
hsa-mir-4735-3p
;
hsa-mir-18b-5p
;
hsa-mir-18a-5p
;
hsa-mir-548m
;
hsa-mir-539-3p
;
hsa-mir-485-3p
;
hsa-mir-5003-3p
;
hsa-mir-519c-3p
;
hsa-mir-519b-3p
;
hsa-mir-519a-3p
;
hsa-mir-4796-3p
;
hsa-mir-548ah-5p
;
hsa-mir-3609
;
hsa-mir-335-3p
;
hsa-mir-5096
;
hsa-mir-6083
;
hsa-mir-4446-5p
;
hsa-mir-4282
;
hsa-mir-526b-5p
;
hsa-mir-5698
;
hsa-mir-744-3p
;
hsa-mir-4423-5p
;
hsa-mir-6501-5p
;
hsa-mir-143-5p
;
hsa-mir-3650
;
hsa-mir-4430
;
hsa-mir-3652
;
hsa-mir-122-5p
;
hsa-mir-504-3p
;
hsa-mir-3135b
;
hsa-mir-6499-3p
;
hsa-mir-367-5p
;
hsa-mir-1267
;
hsa-mir-129-5p
;
hsa-mir-135a-3p
;
hsa-mir-153-3p
;
hsa-mir-3680-3p
;
hsa-mir-448
;
hsa-mir-450b-5p
;
hsa-mir-507
;
hsa-mir-557
;
hsa-mir-5584-5p
;
hsa-mir-6750-5p
;
hsa-mir-6822-5p
;
hsa-mir-9500
Nearest miRNA
hsa-mir-1260a/Upstream/13766925; hsa-mir-1185-1/Downstream/2915011;
Nearest TSS
ENST00000550708/Upstream/54691;
ENST00000521081/Downstream/26919;
Nearest CpG islands
None/Target,
chr14-CpG: 35/Upstream/216611
,
chr14-CpG: 134/Downstream/26674
Upstream sequence
ggtggagcttgcagtgagccgacattggggcgccactgcactccagcctggcagacagagtgagactctgtctcaaaaaaaaaaaagaaaaaagaaaaat
Downstream sequence
gttcaacctcactaataataaggaaaatgtaaatttaaaatcacaataagatgacagtaagattcatccctatcagattggaaaagattTTTTTTAACGT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Sample Information
×
Sample name
080519T
Sample type
Tumor
Gender
Female
CpG Island Information
×
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