Basic Information
VIS ID
TVIS10002318
Fusion event
HBV-chr10 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr10
Cytoband
q26.3
Reference genome
End
135524592/133787267 (Hg38)
Location type
Intergenic
Fragile sites / regions
Nearest miRNA
hsa-mir-107/Upstream/415604;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/26020, None/Downstream
Nearby gene
DUX4L7(-26134) ;
Upstream sequence
gttagggttagggttagggtttagggtcagggtcagggtcagggtcagggtcagggtcagggttaggggttagggtcggggtcggggtcggggtcggggt
Downstream sequence
cagggtcagggtcagggtgagggtgagggtgagggtgagggtcagggtgagggtgagggtgagggtgagggttagggtgagggttagggttagggttagg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate