BNIPL _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002323
Fusion event
HBV-BNIPL integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
151009872/151037396 (Hg38)
End
151009872/151037396 (Hg38)
Location type
UTR5
Fragile sites / regions
FRA1F
Target gene
BNIPL
Nearest miRNA
hsa-mir-101-1/Upstream/485382; hsa-mir-1182/Downstream/508400;
Nearest TSS
ENST00000473358/Upstream/781; ENST00000392802/Downstream/173;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/28780, chr1-CpG: 38/Downstream/10339
Upstream sequence
CTCACCCCAACTTTGTAGGTGGAGCAACTGCTACAGAGGTAAATATGATTAACTTTACATTCCATCTTTCGTCTGCTCCCAAACTTAACAGCAGGTAATC
Downstream sequence
TGCTTCTAGCAAGTGGTGAAGGTAAGAGAAGCATCTGTATAGGAGGCAAGAGATCTGAGTCCTTTTGAAGGCCTATCCTCTGCTCTGTATCTCAATTACT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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