Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002324
Fusion event
HBV-BNIPL integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q21.3
Reference genome
End
151009963/151037487 (Hg38)
Location type
UTR5
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-101-1/Upstream/485473; hsa-mir-1182/Downstream/508309;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/28871, chr1-CpG: 38/Downstream/10248
Upstream sequence
CAGGTAATCTGCTTCTAGCAAGTGGTGAAGGTAAGAGAAGCATCTGTATAGGAGGCAAGAGATCTGAGTCCTTTTGAAGGCCTATCCTCTGCTCTGTATC
Downstream sequence
TCAATTACTGTTCTTCATTTCAATTATTCTTACCTACTATTCAGTTCCCTTGATCTTTTCTTCTTGGGGGCTGTCTTAGGGTCAGGGAGATTGCAGAAGC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.