MAP3K13 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002326
Fusion event
HBV-MAP3K13 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
q27.2
Reference genome
GRCh37/hg19
Start
185025452/185307664 (Hg38)
End
185025452/185307664 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA3C
Target gene
MAP3K13
miRNAs that regulate target gene
hsa-mir-93-5p ; hsa-mir-203a-3p ; hsa-mir-129-5p ; hsa-mir-153-5p ; hsa-mir-3978 ; hsa-mir-589-3p ; hsa-mir-6760-3p ; hsa-mir-6835-3p ; hsa-mir-7850-5p
Nearest miRNA
hsa-let-7g/Upstream/54392; hsa-mir-1248/Downstream/460183;
Nearest TSS
ENST00000440867/Upstream/22271; ENST00000428617/Downstream/21224;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/24556, chr3-CpG: 71/Downstream/190858
Upstream sequence
gacaacgatgaagtttgcttcctcaattgactcctgttttcacaaaagatttctatacaacatgcagtgttgtttgataccagtttacctatagaacttt
Downstream sequence
gcccaagtagctgggattacaggcgcatgccaccacacccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcttg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate