Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002335
Fusion event
HBV-STK17A integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
p13
Reference genome
Start
End
43622737/43583138 (Hg38)
Location type
UTR5
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-4762-3p ; hsa-mir-3192-3p ; hsa-mir-29a-5p ; hsa-mir-3920 ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-1305 ; hsa-mir-573 ; hsa-mir-3616-5p ; hsa-mir-4670-3p ; hsa-mir-4635 ; hsa-mir-3668 ; hsa-mir-5680 ; hsa-mir-148a-5p ; hsa-mir-1250-3p ; hsa-mir-6828-3p ; hsa-mir-6873-3p ; hsa-mir-6502-5p ; hsa-mir-1301-5p ; hsa-mir-767-3p ; hsa-mir-6728-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6824-5p ; hsa-mir-8060 ; hsa-mir-4639-3p ; hsa-mir-6783-5p
Nearest miRNA
hsa-mir-1183/Upstream/432144; hsa-mir-10399/Downstream/468628;
Nearest CpG islands
chr7-CpG: 88/Target, None/Upstream, None/Downstream
Upstream sequence
gccttactacctcctcgcccctctccccacaggactttgctgctttaagggcaagtataaacactaaccctcctgaagacctcttcagaaaagatagtca
Downstream sequence
TGTTTGAAGGCTCCGCGGACCGGCACTAGGAGCCGGGGGCGGGTCCGTGACCCTCCGGCTGCTCGGAGTGAACAGGCGGCCAGGAAAGAAGCGGGCCTGA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.