ABCA4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002337
Fusion event
HBV-ABCA4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
94509081/94043525 (Hg38)
End
94509081/94043525 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1D
Target gene
ABCA4
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-101-1/Upstream/196614; hsa-mir-11399/Downstream/500177;
Nearest TSS
ENST00000473358/Upstream/17930; ENST00000439455/Downstream/17914;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/133614, chr1-CpG: 93/Downstream/193609
Upstream sequence
ACTTTCCTTTCAGCTGGGCATAGAACAGCATGTGCTCAGCCACCGTGAGGCTAGGAGGATGGGACAACGAGAAAAGCAGtggcttagcacttccacttcc
Downstream sequence
agcagctgatcttacagaaataattgaggacaagtattcttgatttggcaatcaagatgctcactgtggtggtgtttatgatacaatacaaaaatagcag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate