CCDC3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002345
Fusion event
HBV-CCDC3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr10
Cytoband
p13
Reference genome
GRCh37/hg19
Start
12997828/12955828 (Hg38)
End
12997828/12955828 (Hg38)
Location type
Intronic
Target gene
CCDC3
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-3155a/Upstream/230475; hsa-mir-107/Downstream/1427372;
Nearest TSS
ENST00000439456/Upstream/195252; ENST00000487935/Downstream/45869;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/605238, chr10-CpG: 78/Downstream/45266
Upstream sequence
ttgttttttgttgtttatttattttattttttgagacagagtctcactctgtcacccaggctggagtgcagtggtgcgatctcagctcactgcaacctca
Downstream sequence
gcctcccaagtaactgggattacaagcatgtgccacctgcctggctaattttatatttttagtagagatgggtttcaccatgttggcaaggctggcctca
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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