Basic Information
VIS ID
TVIS10002350
Fusion event
HBV-chr14 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr14
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
85091440/84625096 (Hg38)
End
85091440/84625096 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/7358806; hsa-mir-1185-1/Downstream/9323130;
Nearest TSS
ENST00000550708/Upstream/710046; ENST00000554753/Downstream/614378;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/3091006, chr14-CpG: 45/Downstream/905054
Nearby gene
LINC00911(+768783) ;
Upstream sequence
tctactaaaagtacaaaaattagctgggcgaggtgtcacacctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcag
Downstream sequence
aggttgcagtgagctgagatcgcaccactgcactccagcctgggtgacagagtgagactctgtctcaaaaaaaaaaaGACTCAGATCAAAAGCACTGATA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate