MUC12 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002351
Fusion event
HBV-MUC12 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
100632468/100989187 (Hg38)
End
100632468/100989187 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA7F
Target gene
MUC12
Nearest miRNA
hsa-mir-10525/Upstream/121080; hsa-mir-10399/Downstream/170286;
Nearest TSS
ENST00000635602/Upstream/19564; ENST00000305119/Downstream/23867;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/23232, chr7-CpG: 33/Downstream/99620
Upstream sequence
aaacattagctcttaGTGTTATCTGATAACTGCACGCTTATATTCAACAAAAACTGCATAGACGCTGGGCAGCTAGATCTTGGTTTTTATTTTGTTTATC
Downstream sequence
aacctctgcctcctgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggtgcctgccaccacacccggctaatttttgtatttt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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