Basic Information
VIS ID
TVIS10002352
Fusion event
HBV-LOC105377509 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
158964150/158042998 (Hg38)
End
158964150/158042998 (Hg38)
Location type
Intronic
Target gene
LOC105377509
Nearest miRNA
hsa-mir-12113/Upstream/5506482; hsa-mir-1305/Downstream/1085804;
Nearest TSS
ENST00000502981/Upstream/405311; ENST00000514381/Downstream/116683;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/820097, chr4-CpG: 20/Downstream/167358
Nearby gene
PRPF31(-466847) ; GASK1B(+81582) ;
Upstream sequence
attccattccataccattccaccaaagttgattgcatgttattccattccattcctttccattccattccataccattccaccaaagttgattgcatgtt
Downstream sequence
aacaacagatacttgcaaggctgcagagaaaagggaatgtttatacactgttggtgtgaatgtaaattaattcagccactgtagaaagcagtttgcggaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate