NBPF22P _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002361
Fusion event
HBV-NBPF22P integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
85569933/86274115 (Hg38)
End
85569933/86274115 (Hg38)
Location type
Promoter
Target gene
NBPF22P
Nearest miRNA
hsa-mir-10397/Upstream/3433891; hsa-mir-103a-1/Downstream/840764;
Nearest TSS
ENST00000502646/Upstream/425613; ENST00000505348/Downstream/60909;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1889330, chr5-CpG: 34/Downstream/993425
Upstream sequence
tttctgtgtgtgcacatccaggtgtgggctgtgtatatgtgtgtgtgtTGCCTGTGTTTCTGTGTGTGCACATCCAGGTGTGGGCTGTGTGTTTCTGTGT
Downstream sequence
aagacttactctgctagatttcaaaactcattttagagctacaataatttaaaagctatggtacgggtgtaagtatacataaataaagtaaaagaataca
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate