Basic Information
VIS ID
TVIS10002364
Fusion event
HBV-LOC101928923 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
156365122/156043988 (Hg38)
End
156365122/156043988 (Hg38)
Location type
Intronic
Target gene
LOC101928923
Nearest miRNA
hsa-mir-10398/Upstream/97109; hsa-mir-1913/Downstream/735690;
Nearest TSS
ENST00000381078/Upstream/588085; ENST00000637910/Downstream/454978;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/729240, chr6-CpG: 41/Downstream/352949
Nearby gene
NOX3(-588085) ; ARID1B(+733942) ;
Upstream sequence
ttggtttgtatttttaatccatttcaccactttatttctaagtggagcattaaatttatttatgttcaaggttaatctgagtgttttgttcctgtcatga
Downstream sequence
aggtgggaactgaacaatgagaacacatggacacaggaagggggacatcacacaccagggcctgttgtggggtcgggggaggggggagggagagcatttg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate