RP1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002374
Fusion event
HBV-RP1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
55521743/54609183 (Hg38)
End
55521743/54609183 (Hg38)
Location type
Promoter
Target gene
RP1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-124-1/Upstream/11712908; hsa-mir-10400/Downstream/7105605;
Nearest TSS
ENST00000518652/Upstream/50014; ENST00000220676/Downstream/6884;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/138554, chr8-CpG: 25/Downstream/12060
Upstream sequence
tattattgcctcaatttcagagcctgttattggtctattcagagattcaacttcttcctggtttagtcttgggagtgtgtatgtgtcgaggaatttatcc
Downstream sequence
ATTGGGTGCTGCTTGGTGTCATTTTACATTTGTGtgggaggccaaggtaggaggattacttgagcctaggagtttgagaccagtcagggaaacaaagtga
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate