Basic Information
VIS ID
TVIS10002393
Fusion event
HBV-chr2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
p12
Reference genome
GRCh37/hg19
Start
76225713/75998587 (Hg38)
End
76225713/75998587 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/907673; hsa-mir-10b/Downstream/3650707;
Nearest TSS
ENST00000437798/Upstream/279467; ENST00000445178/Downstream/987378;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/287574, chr2-CpG: 32/Downstream/2994479
Nearby gene
GCFC2(-287602) ; LRRTM4(+749137) ;
Upstream sequence
CTTATGGTTTGCTTTACTAAAATATACTTGTTCGGTAGGGTAGAAATTCCTCCTTCTATAGTTATGGAAGTCATGGAGGTTTTAATAGCACTTTCATAGT
Downstream sequence
CACACCAATTTCAATGTTTTCCAACAGAATAGtctagccttgtcctctttgagctaatgattgcacaacagccagaataagcaacttcaaacagaaaggg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate