hsa-mir-6777-3p _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002411
Fusion event
HBV-LRATD1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
14765877/14625753 (Hg38)
End
14765877/14625753 (Hg38)
Location type
Promoter
Target gene
LRATD1
miRNAs that regulate target gene
hsa-mir-222-3p ; hsa-mir-221-3p ; hsa-mir-6777-3p ; hsa-mir-5197-5p ; hsa-mir-4279 ; hsa-mir-4691-5p ; hsa-mir-6792-3p ; hsa-mir-642a-5p ; hsa-mir-6845-3p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-548c-3p ; hsa-mir-299-5p ; hsa-mir-29b-2-5p ; hsa-mir-5692a ; hsa-mir-659-3p
Nearest miRNA
hsa-mir-3125/Upstream/1888309; hsa-mir-10b/Downstream/4722676;
Nearest TSS
ENST00000437798/Upstream/9325; ENST00000331243/Downstream/6933;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1906860, chr2-CpG: 248/Downstream/6500
Upstream sequence
aagataaggtggagcagtaaacaagggcaagatcatgaatctgccatatggttgttcaatattttcctgagggcaacagagagttactgagagtttcaag
Downstream sequence
cagggaagtgacctaaaaaatgtacattttagaaatcactctgtatacagtacagggagatgaccacggggaacaacaatgttggggttgggggaataat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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