Basic Information
VIS ID
TVIS10002417
Fusion event
HBV-LOC107984211 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr10
Cytoband
p13
Reference genome
GRCh37/hg19
Start
15253308/15211309 (Hg38)
End
15253308/15211309 (Hg38)
Location type
Intronic
Target gene
LOC107984211
Nearest miRNA
hsa-mir-1265/Upstream/774648; hsa-mir-107/Downstream/2633798;
Nearest TSS
ENST00000439456/Upstream/42616; ENST00000433455/Downstream/26183;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/42594, chr10-CpG: 22/Downstream/1290
Nearby gene
NMT2(-42613) ; FAM171A1(+336) ;
Upstream sequence
GATTTTAACCCTAGAGGAAATTCCTAGGTGTCTAGGTGGTGGGTCTCCAAATACAAGTCTGACAACTGCGTTGCAGACTGCCACCAAGGAAACAATGACA
Downstream sequence
AAGACtttttttttttttttttttttttttttttttttttttgagacaggatctgctctcttacccaggttggagtgcagcagtaccatcctcccacctc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate