Basic Information
VIS ID
TVIS10002418
Fusion event
HBV-chr10 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr10
Cytoband
p13
Reference genome
GRCh37/hg19
Start
15253350/15211351 (Hg38)
End
15253350/15211351 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/774690; hsa-mir-107/Downstream/2633756;
Nearest TSS
ENST00000439456/Upstream/42658; ENST00000433455/Downstream/26141;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/42636, chr10-CpG: 22/Downstream/1248
Nearby gene
NMT2(-42655) ; FAM171A1(+294) ;
Upstream sequence
GTCTCCAAATACAAGTCTGACAACTGCGTTGCAGACTGCCACCAAGGAAACAATGACAAAGACttttttttttttttttttttttttttttttttttttt
Downstream sequence
gagacaggatctgctctcttacccaggttggagtgcagcagtaccatcctcccacctcagcctctcaagtagtggggactacaggcatgagccactataa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate