Basic Information
VIS ID
TVIS10002436
Fusion event
HBV-LOC105370302 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr13
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
87999864/87347609 (Hg38)
End
87999864/87347609 (Hg38)
Location type
Intronic
Target gene
LOC105370302
Nearest miRNA
hsa-mir-1297/Upstream/9649493; hsa-mir-1267/Downstream/271056;
Nearest TSS
ENST00000623511/Upstream/435691; ENST00000325089/Downstream/99626;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/3467847, chr13-CpG: 121/Downstream/323705
Nearby gene
SLITRK6(-1626381) ; MIR4500HG(+96378) ;
Upstream sequence
gcaatatacagattgaacacaattcctgtcaaactaccaaatcattattcacagagttaagaaaaaaatcctaaacttcCttttttaaataataaaaata
Downstream sequence
agactttttttttttttttttttttttttttttttttttttttttttttttgagatggagttttgctgtgtcgcccaggctgcagtgcagtggcgcaatc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate