hsa-mir-4753-3p _LIHC.png
SVEP1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002444
Fusion event
HBV-SVEP1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
113273807/110511527 (Hg38)
End
113273807/110511527 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA9E
Target gene
SVEP1
miRNAs that regulate target gene
hsa-mir-6738-3p ; hsa-mir-544a ; hsa-mir-4753-3p ; hsa-mir-20a-3p ; hsa-mir-130b-5p ; hsa-mir-4793-5p ; hsa-mir-5196-3p ; hsa-mir-501-5p ; hsa-mir-6888-5p ; hsa-mir-3156-5p
Nearest miRNA
hsa-let-7a-1/Upstream/999982; hsa-mir-12126/Downstream/759629;
Nearest TSS
ENST00000422679/Upstream/132149; ENST00000451108/Downstream/38527;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/254510, chr9-CpG: 99/Downstream/67406
Upstream sequence
atatactctaccatatactctagcagagtagtaggctatcccatctatgtttgtgtaagtacactctgagatatttgcacaataataaaactgcataaag
Downstream sequence
CTTCTAATACATATTTTTCCTCTCAAATTTCTTTCATTGCTTGGAATCCTGGCCTTATTTTAGCAATGTAGTTGCCTTTGAATCTCAGGGATTCCATTTT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate