Basic Information
VIS ID
TVIS10002450
Fusion event
HBV-LINC01322 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
164941986/165224198 (Hg38)
End
164941986/165224198 (Hg38)
Location type
Intronic
Target gene
LINC01322
Nearest miRNA
hsa-let-7g/Upstream/1052642; hsa-mir-1224/Downstream/3327656;
Nearest TSS
ENST00000440867/Upstream/17217; ENST00000496693/Downstream/324640;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1219691, chr3-CpG: 23/Downstream/2155941
Nearby gene
SLITRK3(-27517) ; BCHE(+548706) ;
Upstream sequence
TCAGTATTCTACGGAGGAAAATCATGAAACTAAAGCCACATTAAAGTGACAATTTCCTCATTCAGTAGAGAAAAAAAATCACTTAGTTCTTTCCTGAACA
Downstream sequence
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaTCTTTGGGACTATTCTAGTTTGTGCTTCATTTAGTGGAAAAATCAGATTCTGAGAATCAGAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate