Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002476
Fusion event
HBV-AKAP13 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr15
Cytoband
q25.3
Reference genome
Start
End
86032872/85489641 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-423-5p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-149-5p ; hsa-mir-16-5p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-8074 ; hsa-mir-6778-3p ; hsa-mir-4287 ; hsa-mir-4685-3p ; hsa-mir-1281 ; hsa-mir-3667-3p ; hsa-mir-6832-3p ; hsa-mir-183-5p
Nearest miRNA
hsa-mir-10393/Upstream/108979; hsa-mir-11181/Downstream/280855;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/108192, chr15-CpG: 20/Downstream/269077
Nearest cancer related gene
AKAP13(OG, No orient, 0)
Upstream sequence
TGCACCTGGACAAAGAAATAAGCAAGAGAACAAAGACTGTGAAGATTTTCATTTAGATCATATTTGGGATCTGCCAGGGGTGAGTATCATCATTAGAAGG
Downstream sequence
GAGAATATTGCTGCTAAATAAGGAAAAACACTGTACCCGGAGAAGAACTTTTATCTGTCAGTTAAGACAAATAGGCTGGACTCCAAATAAATATTTTAAT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.