IFT80 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002479
Fusion event
HBV-IFT80 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
q25.33
Reference genome
GRCh37/hg19
Start
160030436/160312648 (Hg38)
End
160030436/160312648 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA3D
Target gene
IFT80
miRNAs that regulate target gene
hsa-mir-375
Nearest miRNA
hsa-let-7g/Upstream/1029914; hsa-mir-1224/Downstream/91940;
Nearest TSS
ENST00000440867/Upstream/4867; ENST00000465903/Downstream/7499;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/86004, chr3-CpG: 159/Downstream/86576
Upstream sequence
AAAATGGATCCAGGCTACAAAGCAGACAAGATCTCCTTAACTTTCCTCCATACAGGAAAGTCTGCCTTCCCAGTCATTTTCTCCAATTAGAAGAAGTAGA
Downstream sequence
atataaatatataatatataatatatataataaatatatattatatataaatatataatatataatatatataataaatatatattatatataaatatat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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