Basic Information
VIS ID
TVIS10002488
Fusion event
HBV-SEPTIN14P6 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
p25.3
Reference genome
GRCh37/hg19
Start
140018/140018 (Hg38)
End
140018/140018 (Hg38)
Location type
Intronic
Target gene
SEPTIN14P6
Nearest miRNA
hsa-mir-10398/Downstream/1250296;
Nearest TSS
ENST00000381078/Downstream/63295;
Nearest CpG islands
None/Target, None/Upstream, chr6-CpG: 120/Downstream/151930
Nearby gene
LINC00266-3(+246) ;
Upstream sequence
ctttgggctggagacaatctgatttatgcttccaggtttctccatcaaaactatcttctccaaggtcgcaaatggcctcccggttacagatcccaaatgg
Downstream sequence
gagattacaggcatgagccaccacgccctgctaggagttcacgctttagttggggaaaatatacaataagcaagccaatttttaaaaagagaactgcaat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate