LY96 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002503
Fusion event
HBV-LY96 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
75002210/74089975 (Hg38)
End
75002210/74089975 (Hg38)
Location type
Intronic
Target gene
LY96
Nearest miRNA
hsa-mir-124-1/Upstream/9710718; hsa-mir-10400/Downstream/458568;
Nearest TSS
ENST00000518652/Upstream/37635; ENST00000522498/Downstream/13541;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/113285, chr8-CpG: 52/Downstream/225131
Nearby gene
LY96(-60903) ; JPH1(+144729) ;
Upstream sequence
tgggcaacaaaggtgaaactccatctcaaaaaaataatagtaaaaaaaaaaTTTTTTaatacaaaaattagcagggcgtggtggcatgcacAACGTGGCT
Downstream sequence
ggatggagagaggtggaaaggggaggccaggtcttataaagtaatgattttgcattttggatgagatggaagctttggaggttttagagcaggggaggtt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate