Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002509
Fusion event
HBV-chr5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
q35.3
Reference genome
End
179725427/180298427 (Hg38)
Location type
Promoter;downstream
Fragile sites / regions
miRNAs that regulate target gene
hsa-mir-93-5p ; hsa-mir-199a-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-141-3p ; hsa-mir-128-3p ; hsa-mir-124-3p ; hsa-mir-30b-5p ; hsa-mir-215-5p ; hsa-mir-7-5p ; hsa-mir-192-5p ; hsa-mir-101-3p ; hsa-mir-32-5p ; hsa-mir-149-5p ; hsa-mir-27b-3p ; hsa-mir-92a-3p ; hsa-mir-20b-5p ; hsa-mir-106a-5p ; hsa-mir-1178-3p ; hsa-mir-4635 ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-203a-3p ; hsa-mir-4531 ; hsa-mir-5703 ; hsa-mir-6828-3p ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-767-3p ; hsa-mir-3675-3p ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-367-3p ; hsa-mir-25-3p ; hsa-mir-363-3p ; hsa-mir-199b-3p ; hsa-mir-3129-5p ; hsa-mir-199a-3p
Nearest miRNA
hsa-mir-10397/Upstream/283030; hsa-mir-4638/Downstream/744976;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/5660, chr5-CpG: 43/Downstream/15283
Nearest cancer related gene
MAPK9(TSG, No orient, 0)
Upstream sequence
agcagcgctagaggaattaaagacacacacacacacagaaatatagaggtgtgaagtgggaaatcaggggtctcacagccttcagagctgagagccccga
Downstream sequence
aaggaagacacagatacagaaaacaggagcccaggccggtatggcagctcacgcctgtaatcccagcgctttgggaggccgaggcaggtggatcacgagg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.