Basic Information
VIS ID
TVIS10002510
Fusion event
HBV-SEPTIN14P5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
q35.3
Reference genome
GRCh37/hg19
Start
180761106/181334105 (Hg38)
End
180761106/181334105 (Hg38)
Location type
Intronic
Target gene
SEPTIN14P5
Nearest miRNA
hsa-mir-10397/Upstream/111472;
Nearest TSS
ENST00000502646/Upstream/4864; ENST00000456475/Downstream/33163;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/6262, chr5-CpG: 84/Downstream/102599
Nearby gene
LOC100133331(-5910) ; OR4F16(+33182) ;
Upstream sequence
ggcagaggttgccatgagctgagattgcaccactgcactgtagcctaggcaacagagtgagacgctgtctcaaaaaaaaaatatatatgtatatgtgtat
Downstream sequence
cactgtgggaggccgaggtgggtcgactacctgaggttaggagttcgagaccagcctgaccaacatgatgaaacgctgtctctactaaaaatacaaaaat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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