SCFD2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002515
Fusion event
HBV-SCFD2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
q12
Reference genome
GRCh37/hg19
Start
54024530/53158363 (Hg38)
End
54024530/53158363 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA4B
Target gene
SCFD2
Nearest miRNA
hsa-mir-12113/Upstream/445616; hsa-mir-1243/Downstream/7764256;
Nearest TSS
ENST00000502981/Upstream/212674; ENST00000510668/Downstream/207578;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/295530, chr4-CpG: 43/Downstream/207178
Upstream sequence
tccattccattccattccattccattccattccattccactcgggttgattccattccattccattccattccattccattccattccattccattccat
Downstream sequence
acttgtatatctcacctgtaaatttgattcaatgtgtctaaagctgaaatcactatttgtacccccaaatttgctcttcatcctctacatcctgtactgt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate