Basic Information
VIS ID
TVIS10002517
Fusion event
HBV-FAR2P1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
130794726/130037153 (Hg38)
End
130794726/130037153 (Hg38)
Location type
ncRNA_intronic
Fragile sites / regions
FRA2S
Target gene
FAR2P1
Nearest miRNA
hsa-mir-1285-2/Upstream/2613535; hsa-mir-10b/Downstream/1454007;
Nearest TSS
ENST00000437798/Upstream/57489; ENST00000433507/Downstream/70531;
Nearest CpG islands
chr2-CpG: 34/Target, None/Upstream, None/Downstream
Upstream sequence
GAGGCCAGGGGAACCCACAACTACCTCAACAGCGTGCGGGACTCCATTCGGTCCACAGGGCTGGATGGCCTGGGGCCGAGGCCACCCCGAAGCCCCCGGC
Downstream sequence
GACCCCGCCGTCTGCGTCCTATTACCCGAACACTGCACACCGCTGCCCTACGGCGCCCTGGAGCTGGACCCACTGCCACATGGCCCGCGCTGCTCAGCTG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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