Basic Information
VIS ID
TVIS10002524
Fusion event
HBV-chr5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
4164496/4164383 (Hg38)
End
4164496/4164383 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-4277/Upstream/2455515; hsa-mir-10397/Downstream/2663470;
Nearest TSS
ENST00000502646/Upstream/28701; ENST00000503188/Downstream/275876;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/201985, chr5-CpG: 39/Downstream/701821
Nearby gene
IRX1(-562979) ; LINC02114(+609098) ;
Nearest cancer related gene
IRX1(TSG, -562979) ;
Upstream sequence
CCTGCAACACTTCCCCGCGACTTGGGCTCCTTGACACAGGCCCGTCATTTCTCTTTGCAGGTTCTCAGGCGGCGAGGGGTCCCCACCATGAGCAAACCAC
Downstream sequence
ggttctcaagcaactctaattttagaccctcaaagcacaaaatagaggattacactctttcttctaaacaatgtgttactggcccatgcctgtgtaggaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate