Basic Information
VIS ID
TVIS10002536
Fusion event
HBV-chr22 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr22
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
16206430/15771531 (Hg38)
End
16206430/15771531 (Hg38)
Location type
Intronic
Target gene
LINC01297 ; LOC107987324
Nearest miRNA
hsa-let-7a-3/Downstream/1992649;
Nearest TSS
ENST00000624155/Upstream/5844; ENST00000609641/Downstream/144269;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/10856, chr22-CpG: 38/Downstream/5724
Nearby gene
BMS1P18(-34165) ; POTEH(+49902) ;
Upstream sequence
CACATTTTATATACAGCATTACATTTTACTTCAGACACTTAACAAAGTAAGTGTCCTGGAGAATCTTGGTCTGTTAGTCTATATAATTAcataagcatct
Downstream sequence
tttgtgggattaatagtttttccaaagcatgcctggaatgcttgcataacattttagagtttaaatatgttgtttatcgccaggcacggtggctcacacc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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