CLEC2L _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002615
Fusion event
HBV-CLEC2L integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q34
Reference genome
GRCh37/hg19
Start
139198706/139513960 (Hg38)
End
139198706/139513960 (Hg38)
Location type
Promoter
Target gene
CLEC2L
Nearest miRNA
hsa-mir-10399/Upstream/469803; hsa-mir-11400/Downstream/2960567;
Nearest TSS
ENST00000635602/Upstream/30248; ENST00000521281/Downstream/9896;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/29994, chr7-CpG: 81/Downstream/9728
Upstream sequence
ttcaggtgatccacccgcctcggcctcccaaagtgcagggattacagatgtcagccactgcgcctagccCAGCCTTCACCAACACATTTCTAACACCAGA
Downstream sequence
cccaggctggagtgcagtggtacaatcgcctcagcctcctgagtagctgggactacaggcacctgctaccacacctggctaatttttgtatttttggtag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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