CPS1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002616
Fusion event
HBV-CPS1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q34
Reference genome
End
211519161/210654437 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/2899556; hsa-mir-1244-1/Downstream/1771826;
Upstream sequence
TCATCCTGTACTCATCATTCCTTTTGAATAGATTTTCTCTCTCATTTTCTTTTGTCTGTGTCTTTCCTTTTATGTTTCAATGGCTATTATGAAAACATCT
Downstream sequence
AATACTTTTCTTTCTGAAGTTCCCAATCGAATCCTGGTTTTTCTTCTTTCTTCATTTCCCATCCTCCTCCCTTTTTATTGGGTTAATAAAGGCAAAGTCA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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