Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS10002616
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002616
Fusion event
HBV-CPS1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q34
Reference genome
GRCh37/hg19
Start
211519161/210654437 (Hg38)
End
211519161/210654437 (Hg38)
Location type
Intronic
Target gene
CPS1
miRNAs that regulate target gene
hsa-mir-17-5p
;
hsa-mir-3121-3p
;
hsa-mir-4255
;
hsa-mir-4709-3p
;
hsa-mir-7154-5p
;
hsa-mir-101-3p
;
hsa-mir-1255b-5p
;
hsa-mir-1255a
;
hsa-mir-6744-5p
;
hsa-mir-8060
;
hsa-mir-16-1-3p
;
hsa-mir-144-3p
;
hsa-mir-216a-5p
;
hsa-mir-522-3p
;
hsa-mir-224-3p
;
hsa-mir-4694-3p
;
hsa-mir-6516-5p
;
hsa-mir-6738-3p
;
hsa-mir-1303
;
hsa-mir-3678-3p
;
hsa-mir-1273h-3p
;
hsa-mir-5001-3p
;
hsa-mir-4727-5p
;
hsa-mir-1200
;
hsa-mir-142-3p
;
hsa-mir-630
;
hsa-mir-146b-3p
;
hsa-mir-6799-3p
;
hsa-mir-3173-5p
;
hsa-mir-7976
;
hsa-mir-496
;
hsa-mir-302a-5p
;
hsa-mir-18a-3p
;
hsa-mir-324-3p
;
hsa-mir-1913
;
hsa-mir-4682
;
hsa-mir-544b
;
hsa-mir-4324
;
hsa-mir-4778-5p
;
hsa-mir-200b-5p
;
hsa-mir-200a-5p
;
hsa-mir-4796-3p
;
hsa-mir-93-5p
;
hsa-mir-526b-3p
;
hsa-mir-519d-3p
;
hsa-mir-20b-5p
;
hsa-mir-20a-5p
;
hsa-mir-106b-5p
;
hsa-mir-106a-5p
;
hsa-mir-548ah-5p
;
hsa-mir-3609
;
hsa-mir-548l
;
hsa-mir-8054
;
hsa-mir-548k
;
hsa-mir-548av-5p
;
hsa-mir-548c-3p
Nearest miRNA
hsa-mir-10b/Upstream/2899556; hsa-mir-1244-1/Downstream/1771826;
Nearest TSS
ENST00000437798/Upstream/23209;
ENST00000470791/Downstream/2923;
Nearest CpG islands
None/Target,
chr2-CpG: 135/Upstream/177625
,
chr2-CpG: 86/Downstream/1883019
Upstream sequence
TCATCCTGTACTCATCATTCCTTTTGAATAGATTTTCTCTCTCATTTTCTTTTGTCTGTGTCTTTCCTTTTATGTTTCAATGGCTATTATGAAAACATCT
Downstream sequence
AATACTTTTCTTTCTGAAGTTCCCAATCGAATCCTGGTTTTTCTTCTTTCTTCATTTCCCATCCTCCTCCCTTTTTATTGGGTTAATAAAGGCAAAGTCA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Sample Information
×
Sample name
081344T
Sample type
Tumor
Gender
Female
CpG Island Information
×
Download
Curate