Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002656
Fusion event
HBV-ARMC9 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
End
232056607/231191893 (Hg38)
Location type
Promoter
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/3719706; hsa-mir-1244-1/Downstream/170815;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/134635, chr2-CpG: 51/Downstream/6566
Upstream sequence
ttagccggcacggcagcgtgtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgagccgag
Downstream sequence
atcgcgccactgcactctagcctgggcgacagagccagactccatctcaaaaaaaataaaaaataaaaaagaaaGTGACAGTCGTCATGAAAAGTCTTAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.