ARMC9 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002657
Fusion event
HBV-ARMC9 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
GRCh37/hg19
Start
232058571/231193857 (Hg38)
End
232058571/231193857 (Hg38)
Location type
Promoter
Target gene
ARMC9
Nearest miRNA
hsa-mir-10b/Upstream/3721670; hsa-mir-1244-1/Downstream/168851;
Nearest TSS
ENST00000437798/Upstream/23455; ENST00000482392/Downstream/4689;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/136599, chr2-CpG: 51/Downstream/4602
Upstream sequence
ATTGTGAAATAAGAAAAATATATAATTAggccgggtacggtggctcacacctgtaatcctagcactttgagaggctgaggcgggcagatcacctgaggtc
Downstream sequence
aggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaactaggtgggcgtggggggcacgcacctgtaatcacagct
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate