VISDB Viral Integration Site DataBase

VIS ID

TVIS10002671

Fusion event

HBV-ZNF740 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr12

Cytoband

q13.13

Reference genome

Start

End

53578518/53184734 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-450a-2-3p ; hsa-mir-6857-5p ; hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-6810-5p ; hsa-mir-2110 ; hsa-mir-3117-3p ; hsa-mir-6825-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-3175 ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6878-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-4427 ; hsa-mir-3140-5p ; hsa-mir-6760-5p ; hsa-mir-8083 ; hsa-mir-3169 ; hsa-mir-4759 ; hsa-mir-4773 ; hsa-mir-587 ; hsa-mir-2355-5p ; hsa-mir-627-3p ; hsa-mir-6734-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-6793-3p ; hsa-mir-589-3p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-605-5p ; hsa-mir-1207-5p ; hsa-mir-1250-3p ; hsa-mir-1305 ; hsa-mir-153-5p ; hsa-mir-1537-5p ; hsa-mir-211-3p ; hsa-mir-4721 ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-5088-5p ; hsa-mir-607 ; hsa-mir-6758-3p ; hsa-mir-7150 ; hsa-mir-7845-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/127722; hsa-let-7i/Downstream/807004;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/3368, chr12-CpG: 48/Downstream/12736

Upstream sequence

ATGACAAAGGTGTCAGTAATACTTGATTATTTACTTGATCTATATTTAAATGCTGAAGGATGACAAGATAAGTCGTTCCTGGTGAGATGAGTTAGGGAGG

Downstream sequence

ACTCTTGAAGGAAGCAAGGCTTTGGCAGTGAGGAGGGACATTCCCTGGAGAGAAGCAGTTTGTAGCAGGGTGTAAAAGGTAGTTCTATAGAGGATGGCAG