VISDB Viral Integration Site DataBase

VIS ID

TVIS10002685

Fusion event

HBV-LRIF1 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr1

Cytoband

p13.3

Reference genome

Start

End

111480380/110937758 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-4310 ; hsa-mir-7157-5p ; hsa-mir-4668-5p ; hsa-mir-3152-5p ; hsa-mir-6514-3p ; hsa-mir-4774-3p ; hsa-mir-6894-3p ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-186-3p ; hsa-mir-3613-3p ; hsa-mir-5588-3p ; hsa-mir-548e-5p ; hsa-mir-1258 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6739-3p ; hsa-mir-3658 ; hsa-mir-4677-5p ; hsa-mir-7156-5p ; hsa-mir-2117 ; hsa-mir-4273 ; hsa-mir-5193 ; hsa-mir-660-3p ; hsa-mir-4279 ; hsa-mir-6882-3p ; hsa-mir-4524a-3p ; hsa-mir-7157-3p ; hsa-mir-6737-3p ; hsa-mir-5008-3p ; hsa-mir-1304-3p ; hsa-mir-1208 ; hsa-mir-6760-3p ; hsa-mir-1182 ; hsa-mir-4524b-3p ; hsa-mir-5089-5p ; hsa-mir-6807-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-4252 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-1273g-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-576-3p ; hsa-mir-5683 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p

Nearest miRNA

hsa-mir-101-1/Upstream/1338791; hsa-mir-11399/Downstream/1524012;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/156947, chr1-CpG: 87/Downstream/25501

Nearby gene

CD53(-37822) ; LRIF1(+9432) ;

Upstream sequence

tcttaaagaactagaaaagcaagagcaaacctcacccaaaattagtagaagaaaagaaataataaagagcagaaataaatgaaattgaaatagagaaaat

Downstream sequence

acaaaagatcaatgaaacaaaatggttttttgaaaagttaaacaaaatttacaaacctttagccagactaagaagaaaaaaggagacacaaattaataaa