KDM4C _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002689
Fusion event
HBV-KDM4C integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
6832340/6832340 (Hg38)
End
6832340/6832340 (Hg38)
Location type
Intronic
Target gene
KDM4C
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-409-3p ; hsa-mir-432-5p
Nearest miRNA
hsa-mir-101-2/Upstream/824436; hsa-let-7a-1/Downstream/11740966;
Nearest TSS
ENST00000422679/Upstream/26723; ENST00000496464/Downstream/60783;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/73468, chr9-CpG: 43/Downstream/967015
Nearest cancer related gene
KDM4C(OG, No orient, 0)
Upstream sequence
ctgggtgcagtggctcacgcctgtaatcccagcaccttgggaagccaaggcgggcagatcagaaggtcaagagacatagaccattttggccaaaatggtg
Downstream sequence
aaaaaaaaaaaaGTTGAATTTGTCAAGGGGCTTAATAGTCTAGAAAATATGAATAAAGTAGTATAGATTATTCtttttcttttttttctttttttttttt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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