Basic Information
VIS ID
TVIS10002692
Fusion event
HBV-chr17 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
21855643/22329037 (Hg38)
End
21855643/22329037 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/2984463; hsa-mir-10226/Downstream/4964873;
Nearest TSS
ENST00000595228/Upstream/29662; ENST00000612344/Downstream/76982;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/111516, chr17-CpG: 27/Downstream/106337
Nearby gene
FAM27E5(-29144) ; FLJ36000(+48419) ;
Upstream sequence
CTTAAGAGCTGAAGCAAGCAGCAGTATTGCTAGCAGAGCTACTGCACATCTGCACATGTGCTCCAATGGCTCTGATCTGTTTTTTTCCCAGTATGAACCT
Downstream sequence
AATACATGAGGCAAGTTAGAAAATCGGAGTTggccaggcatgatggctcacgcctgtaatcctggtactttgggagccagcgtgggtggctcacttgagg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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