KHDRBS2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002709
Fusion event
HBV-KHDRBS2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
61914349/61914349 (Hg38)
End
61914349/61914349 (Hg38)
Location type
Intronic
Target gene
KHDRBS2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-148b-3p
Nearest miRNA
hsa-mir-10398/Upstream/4524137; hsa-mir-10524/Downstream/9462611;
Nearest TSS
ENST00000381078/Upstream/1191201; ENST00000370659/Downstream/371878;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/3952799, chr6-CpG: 45/Downstream/371601
Nearby gene
MTRNR2L9(+369659) ;
Upstream sequence
TCCATATAGTACAGATCCTGTGACATTGTTTACTAAAGGAAAAAAATAATAAAACATTATACAGTCAAGTAGGATTGGGCATATTGCCTATTATTGCCCG
Downstream sequence
ggaggcctcaaagaagtccaaatatccacttgcagattctacaaaaagagtgtttcaaaaccgttatatcaagaggaatgttcaactctgtaagttgaat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate